hi, On Monday 18 December 2006 12:34, OZGE ENGIN wrote: > Hi, > > I have a problem with g_hbond. I want to investigate the H bonds formed not > only within the protein but also between water molecules and the protein.In > this respect, I select the group 0 --> 'system' option for both > selections, an error message like the following one appears: > > Segmentation fault > > How can I fix this problem?
Please describe your system more: how many atoms how many water molecules ... Does g_hbond run with your test system (20 aa some water molecules) I think it is a memory problem, if you take too much atoms into account g_hbond can consume a little bit more memory (depends also on your options) > > Thanks in advance > > Ozge > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php Greetings, Florian -- ------------------------------------------------------------------------------- Florian Haberl Computer-Chemie-Centrum Universitaet Erlangen/ Nuernberg Naegelsbachstr 25 D-91052 Erlangen Telephone: +49(0) − 9131 − 85 26581 Mailto: florian.haberl AT chemie.uni-erlangen.de ------------------------------------------------------------------------------- _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php