Dear Ms.Sharada, I have been following yours this thread with a hope of a break out for this long lasting problem. Indeed I gave up and somehow adjusted with pre-compiled older version (users' contribution), available in gmx site. But as of now I am mostly running gromacs in windows though I got two SGI to spare for my research work (really feel bad that I am not doing any justice to this wonder machine having in my side!!!). Sorry to disappoint you and rather I can suggest you to give a try to get executables of current version from any of the users or even by the developers (remembering that I requested in the list sometime ago but no responds and you can try your luck now!!!! :-) ). And do not forget to inform me of any breakout.
Regards, B.Nataraj On Wed, 17 Jan 2007 17:13:44 +0530 (IST), "sharada" <[EMAIL PROTECTED]> said: > > > > > > Dear gmx_users > In particular to Dr.B.Nataraj > (I am doing this as I donot have his email address) > I have found the program 'main.c' in gmxlib folder and I corrected the > lines 247 in main.c I could compile further then I got 4 errors in > 'gmx_fftw_fftw3.c ' about ' pc += 8; ...../ > when I looked in the gmx_users list I found a similar thread of mails > written by Dr. B.Nataraj around April 2006 who I presume had a similar > problem in installing the package on SGI, and accordingly I went about > correcting the errors as they occured . However now I have got around 20 > errors in the program 'gmx_chi.c' for which there are no corrections and > and the thread is stopped on this problem. I would like to know how he > could solve the problem of installation of gromacs 3.3.1 on the SGI IRIX > after that. Whether the problem got solved or not ? I would like to > request him to give me some suggestions in this regard. I am desperate > in installing it on SGI using MIPSpro compilers (cc) before I switch over > to gcc as this would take time. > Thanks in advance > Sharada > -- Original Message -- > From: sharada <[EMAIL PROTECTED]> > To: Discussion list for GROMACS users <[email protected]> > Date: Tue, 16 Jan 2007 15:43:32 +0530 (IST) > Subject: Re: [gmx-users] error while compilation of Gromacs 3.3.1..... > > > > > > > > > Dear Drs. Martin Hofling and Mark Abraham, > I agree with your suggestions since I have gone through the gmx_users > previous mails written by others in this line where in compilation on SGI > machines didnot go off without problems. In any case I would like to > bring to your notice once again to the errors I got when I was compiling > Gromacs 3.3.1 > cc-1197 cc: WARNING File = main.c, Line = 247 > The indicated format string requires additional arguments. > "%s (%s)\n\n\n",BUILD_TIME,BUILD_USER,BUILD_MACHINE); > ^ > cc-1018 cc: ERROR File = main.c, Line = 247 > An unmatched left parentheses "(" appears in an expression. > "%s (%s)\n\n\n",BUILD_TIME,BUILD_USER,BUILD_MACHINE); > ^ > cc-1008 cc: ERROR File = main.c, Line = 247 > A new-line character appears inside a string literal. > "%s (%s)\n\n\n",BUILD_TIME,BUILD_USER,BUILD_MACHINE); > ^ > > > The above lines clearly indicates that there is an extra new-line > character and also unmatched left > paranthesis in the formats statements in line number 247. I strongly feel > that if these are corrected then may be my compilation would go > smoothly, however I donot know where is the 'main.c' program. If I am > right then I would like to do this first, if you can tell me where to > look for main.c or is it possible ? > with regards > sharada > > " > -- Original Message -- > From: sharada <[EMAIL PROTECTED]> > To: [email protected] > Date: Thu, 11 Jan 2007 16:22:58 +0530 (IST) > Subject: [gmx-users] error while compilation of Gromacs 3.3.1..... > > Dear Gromacs users, > I am installing the Gromacs version 3.3.1 on the SGI Octane with IRIX 6.5 > R12000 > system. I could successfully installed fftw package and trying the > compile gromacs. > I am getting the following at the end of the 'make' command : > ........ > These are the last few lines after the make command > include -DGMXLIBDIR=\"/usr/local/gromacs/share/top\" -I/usr/local/include > -r12000 -mips4 -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON > -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3 > -OPT:Olimit=0:roundoff=3:alias=typed -woff 1174 -D__INLINE_INTRINSICS -c > -o main.lo main.c > cc -DHAVE_CONFIG_H -I. -I. -I../../src -I../../include > "-DGMXLIBDIR=\"/usr/local/gromacs/share/top\"" -I/usr/local/include > -r12000 -mips4 -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON > -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3 > -OPT:Olimit=0:roundoff=3:alias=typed -woff 1174 -D__INLINE_INTRINSICS -c > main.c -Wp,-MDupdate,.deps/main.TPlo -o main.o > cc-1197 cc: WARNING File = main.c, Line = 247 > The indicated format string requires additional arguments. > "%s (%s)\n\n\n",BUILD_TIME,BUILD_USER,BUILD_MACHINE); > ^ > cc-1018 cc: ERROR File = main.c, Line = 247 > An unmatched left parentheses "(" appears in an expression. > "%s (%s)\n\n\n",BUILD_TIME,BUILD_USER,BUILD_MACHINE); > ^ > cc-1008 cc: ERROR File = main.c, Line = 247 > A new-line character appears inside a string literal. > "%s (%s)\n\n\n",BUILD_TIME,BUILD_USER,BUILD_MACHINE); > ^ > 2 errors detected in the compilation of "main.c". > *** Error code 1 (bu21) > *** Error code 1 (bu21) > *** Error code 1 (bu21) > *** Error code 1 (bu21) > *** Error code 1 (bu21) > How can I correct this error?Where is the main.c ? Kindly tell me if I > have to set some parameters while compilation. > regards > sharada_______________________________________________" > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > > > > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > > > -- raja [EMAIL PROTECTED] -- http://www.fastmail.fm - One of many happy users: http://www.fastmail.fm/docs/quotes.html _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
