Hello I would like to use the TIP3P model in my calculation, and I would like to be able to use genbox to solvate a pepetide, but there is no TIP3P.gro coordinate file in the program. I there such a coordinate file available? Will
----- Original Message ----- From: [EMAIL PROTECTED] Date: Friday, February 2, 2007 11:46 am Subject: [gmx-users] fitting procedure in g_rmsf To: [email protected] > Hello, > > I have a rather basic query. > I want to know which atoms of the reference structure will be used for > fitting , in g_rmsf program. > In the program g_rms there are separate options for fitting and > calcualation of rmsd. I wonder if it is possible for the user to > select a > set of atoms for fitting and calculate the rmsf over another range of > atoms or the whole protein, similar as in g_rms program. > > Waiting for your suggessions. > > sridhar > > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
