Hu Ugur, actually you don't have to care to run the lipid pdb by Tieleman through pdb2gmx at all - just copy the respective lines out of lipid.itp into ffG43a1bon.itp and ffG43a1nb.itp (or the force field you want to use) and put "#include pope.itp" into your *.top file - et voila, you're done. Attention: the lipid parameters are optimized to be used with SPC water! So pay attention when using TIP3... Greetings Steffen > Hi all; > I am new to Gromacs, trying to create a membrane with POPE lipids. I > got the pope.itp and lipid.itp (for Gromos87) files from Tieleman > group web site, and trying to make POPE recognized by pdb2gmx. So far > I could not get it done.. > > - Can it be because lipid.itp is not for Gromos96? does anyone have > lipid.itp for Gromos96? > - Which force field would be a better choice for TIP3 and POPE > application? > > I'd appreciate any help.. > cheers > > _________________________________________________________________ > Valentine’s Day -- Shop for gifts that spell L-O-V-E at MSN Shopping > http://shopping.msn.com/content/shp/?ctId=8323,ptnrid=37,ptnrdata=24095&tcode=wlmtagline > > > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please don't post (un)subscribe requests to the list. Use the www > interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php
-- Dipl.-Chem. Steffen Wolf Department of Biophysics University of Bochum ND 04/67 44780 Bochum Germany Tel: +49 (0)234 32 28363 Fax: +49 (0)234 32 14626 E-Mail: [EMAIL PROTECTED] Web: http://www.bph.rub.de _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
