Eugenia,
I fail to understand how this ties in with your subject, stating
something about urea. Please have the subject of your mail reflect the
question you ask.
As for guanidinium chloride. Guanidinium you can take from the
arginine side chain and chloride is natively part of the force field
anyway. Unfolding depends on many parameters, including size of the
protein and the time scale.
Cheers,
Tsjerk
On 2/6/07, Eugenia Polverini <[EMAIL PROTECTED]> wrote:
Dear all,
anyone knows if it is possible in Gromacs to perform protein unfolding
simulations with the Guanidinium chloride in a box of water ?
Thanks in advance!
Eugenia
--
Eugenia Polverini, Ph.D.
Dept. of Physics
University of Parma
Parco Area delle Scienze, 7/A
43100 Parma
ITALY
Phone: +39 0521 905254
Fax: +39 0521 905223
E-Mail: [EMAIL PROTECTED]
http://www.fis.unipr.it/~polveri
_______________________________________________
gmx-users mailing list [email protected]
http://www.gromacs.org/mailman/listinfo/gmx-users
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
--
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623
_______________________________________________
gmx-users mailing list [email protected]
http://www.gromacs.org/mailman/listinfo/gmx-users
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
