Dear All, I have performed a MD simulation of a helical peptide in a solvent box.
Now I am interested on determining the angle between the helix axis and the side chain of some residues (defined by the vector form Cb to the terminal heavy atom of each residue). I am trying to do so using g_bundle... is this a good aproach? My problem with g_bundle is that I can define the top and bottom of the helix axis, but how can I define the other axis for each residue? Thanks! Cheers Afonso __________________________________________________ Fale com seus amigos de graça com o novo Yahoo! Messenger http://br.messenger.yahoo.com/
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