according to what you have described, it is correct. is your reference
structure wrong for RMSD calculation?
On 3/27/2007 8:56 PM, özge kül wrote:
HI EVERYBODY,
I HAVE A PROBLEM WITH gen_vel.IF I MAKE AN ANALYZE WITH POSITION
RESTRAINT I USED gen_vel=yes.AFTER FOR FULL MDP I USED
gen_vel=no.AFTER THAT I USED gen_vel=no FOR AGAIN FULL.MDP.BUT I GOT
VERY BAD RMSD GRAPHICS.ANY HELP ABOUT WHAT IS THE MEANING OF
gen_vel=no,gen-vel=yes?
THANK YOU...
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