Hi,
I believe you should generate an index file (make_ndx) with the atoms
you are interested in and run g_order.
Good luck,
/Carl
Dinesh Pinisetty wrote:
Hello Everyone,
I have a 50ns simulation which involves DMSO molecules. How do
I find the orientation of DMSO molecules for the whole simulation. I
know that water orientation can be found by using the command g_h2order.
I tried using g_h2order for DMSO molecules orientation but I was not
sure if that is right. I will greatful if anyone could suggest me the
right command to be used.
Sincerely,
Dinesh.
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