-------- Original Message --------
Subject: g_sas in GROMACS
Date: Sat, 14 Apr 2007 21:35:59 +0400
From: Evstigneev Maxim <[EMAIL PROTECTED]>
Reply-To: Evstigneev Maxim <[EMAIL PROTECTED]>
To: [EMAIL PROTECTED]
Dear Dr van der Spoel,
Please advise us to sort out the following situation with Gromacs.
I installed Gromacs version 3.3.1 and Amber force fields for Gromacs
(for DNA analysis). Then I used pdb2mx program in order to create
topology files, which had been successfully executed. After that I tried
to use pdb and topology DNA files in G_SAS program. At this point the
message: "Can not read file this file is from a Gromacs version which
is older than 2.0. Make a new one with grompp or use a gro or pdb file,
if possible" was generated. I also failed to launch G_SAS program with
protein files.
Thank you in advance.
Sincerely,
Dr Maxim P. Evstigneev,
Reader of Physics and Biophysics,
Department of Physics,
Sevastopol National Technical University, Ukraine
--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
[EMAIL PROTECTED] [EMAIL PROTECTED] http://folding.bmc.uu.se
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