uma reddy wrote:
hi,
i am beginer to GROMACS. i am using the examples provided in the gromacs
site. when i try to generate solvent model for speptide of ribonuclese s
peptide then i encounter a problem stating
[EMAIL PROTECTED]:~/gromacs/gromacs/tutor/speptide$ genbox -cp out -cs -p
speptide -0 b4em
:-) genbox (-:
Option Filename Type Description
------------------------------------------------------------
-cp out.gro Input, Opt! Generic structure: gro g96 pdb tpr tpb tpa
xml
-cs spc216.gro Input, Opt!, Lib. Generic structure: gro g96 pdb
tpr tpb
tpa xml
-ci insert.gro Input, Opt. Generic structure: gro g96 pdb tpr tpb tpa
xml
-o out.gro Output Generic structure: gro g96 pdb xml
-p speptide.top In/Out, Opt! Topology file
-------------------------------------------------------
Program genbox, VERSION 3.3.1
Source code file: statutil.c, line: 799
Invalid command line argument:
-0
-------------------------------------------------------
Suggesting this is a bug is really quite silly. You've used "-0" 'dash
zero' as a command line argument. Genbox has complained specifically
about it, and presented the acceptable command line flags, which include
'dash lowercase-o'. Computers are literal, and to use them successfully
you must think in an orderly fashion and be attentive to detail. :-)
Mark
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