Dear Erik and Florian, Thanks for your reply.In my pdb file, the ligand has has been bound with the enzyme(there is a bond between them), and I just want change the side chain of the ligand, should I use a docking?
On Wednesday, 9. May 2007 10:45, Rui Li wrote: > Dear all, > I want to change the ligand in pdb file(add,delete atoms and change > conformation),Who can introduce a software to me? > Any reply is appreciated.Thanks in advance >As Erik said pymol is a possible solution, but i don`t think that you can >easily change conformation of the ligand, for this i would use a docking >suite like autodock or something similar, cause you want valid or bioactive >conformations of your ligand. >greetings, >Florian _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
