Tuan A. Tran wrote:
Hi all,
I have problem with using genion program. It halted when I am trying to
replace solvent molecules with ions. I have gromacs-3.3.1 which is a
package in debian etch. So I removed it and re-compiled with gcc-4.1.2 .
It did not solve the problem. When I compiled gromacs-3.2.1 with
gcc-4.1.2, then it worked (on a dell i386 dual core machine). I am also
aware of a sucessful compilation of gromacs-3.3.1 with gcc-4.0.2.
When I used genion program in gromacs-3.3.1 version on a AMD 64x2
machine running debian etch, it ran just fine.
Does anyone know what is going on with gromacs-3.3.1 and gcc-4.1.2 on a
i386 machine?
Tuan
gcc 4.1.x is broken, but there is a fix in CVS for at least one of the
bugs. See bugzilla for more info.
--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
[EMAIL PROTECTED] [EMAIL PROTECTED] http://folding.bmc.uu.se
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