Hi,
editconf -h
-rotate shall follow three numbers.
Regards,
Yang Ye
On 5/20/2007 8:12 AM, Sheyore Omovie wrote:
Hi Yang,
Thanks.
But I got the following error message when I tried to rotate the
molecule using editconf:
'Expected a real argument for option -rotate'
What's the correct syntax for rotate. This is what i did at the prompt:
editconf -rotate sele.pdb
Can u tell me what i'm doing wrong.
Rgds
John
From: Yang Ye <[EMAIL PROTECTED]>
Reply-To: Yang Ye <[EMAIL PROTECTED]>,Discussion list for GROMACS
users <[email protected]>
To: Discussion list for GROMACS users <[email protected]>
Subject: Re: [gmx-users] Two polypeptides in one box
Date: Sat, 19 May 2007 10:34:56 -0700 (PDT)
To combine two structures, use editconf to translate/rotate each
first and combine with a text editor.
----- Original Message ----
From: Sheyore Omovie <[EMAIL PROTECTED]>
To: [email protected]
Sent: Sunday, May 20, 2007 1:22:15 AM
Subject: [gmx-users] Two polypeptides in one box
Hi gromacs users,
I want to simulate interaction between two polypeptides in one box. I
have
read Tsjerk response to a similar question. However, i dont know just
how to
implement it, i.e how do I position two pdb files using editconf and
create
one pdb file. If possible I'll appreciate specific commands on how to
implement this.
I also tried using pymol, but because I'm also new to this software,
I could
not figure it out.
Regards
John
_________________________________________________________________
PC Magazine?s 2007 editors? choice for best Web mail?award-winning
Windows
Live Hotmail.
http://imagine-windowslive.com/hotmail/?locale=en-us&ocid=TXT_TAGHM_migration_HM_mini_pcmag_0507
_______________________________________________
gmx-users mailing list [email protected]
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before
posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
_______________________________________________
gmx-users mailing list [email protected]
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before
posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
_________________________________________________________________
PC Magazine?s 2007 editors? choice for best Web mail?award-winning
Windows Live Hotmail.
http://imagine-windowslive.com/hotmail/?locale=en-us&ocid=TXT_TAGHM_migration_HM_mini_pcmag_0507
_______________________________________________
gmx-users mailing list [email protected]
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
