Edvin Erdtman wrote:
Hi
I am doing MD-calculations on double layer lipid membranes. When I
wanted to calculate the distance between the com. of the lipids and my
molecule with g_dist, the program just stops! Sometimes directly and
sometimes after a couple of picoseconds. When checking the output it can
end like this:
216.0000153 3.7262651 2.1282473 1.1397220 -2.8384237
216.5000153 3.7
Am I doing something wrong?
How can we tell? You haven't given us your command line, or a meaningful
chunk of output.
I tried to convert the trajectory using
trjconv -pbc, but non of the options seems to work.
They don't work, or they don't fix the above problem? What are you using
it for anyway?
Mark
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