>I am trying to solvate a protein in a rectangular box, keeping it towards one face. >But whatever position I choose ( with editconf - translate ), genbox is centering it >while solvation. How to override this and keep the protein not at center of box?
Why is this a concern? For simulation purposes, because of PBC, it doesn't matter where in the box the protein is located. For visualisation purposes, that is something that you deal with after the simulation has been run. Catch ya, Dr. Dallas Warren Lecturer Department of Pharmaceutical Biology and Pharmacology Victorian College of Pharmacy, Monash University 381 Royal Parade, Parkville VIC 3010 [EMAIL PROTECTED] +61 3 9903 9524 --------------------------------- When the only tool you own is a hammer, every problem begins to resemble a nail. _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
