Hi,
g_sas for determining solvent accessible area requires a .tpr file as
input, presumably to extract the charges in order to determine whether
atoms are hydrophobic or hydrophilic. However the -f_index option allows
a .ndx file to make this assignment. Thus it seems to me that these
options should be mutually exclusive (if there's no other function of
the .tpr file), or at least the .tpr should be optional if -f_index is used.
Am I missing something here?
Mark
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