Small errors like that are usually down to things like running genion and not changing the .top. I think I made a problem for myself once with non-consecutive atom numbering, too.
----- Original Message ---- From: Mark Abraham <[EMAIL PROTECTED]> To: Discussion list for GROMACS users <[email protected]> Sent: Friday, June 8, 2007 3:48:28 AM Subject: Re: [gmx-users] Coordinate file does not match topology Sheyore Omovie wrote: > Dear gromacs users, > While trying to preprocess my files with grompp, i got the ff error > message: > "Number of coordinates in coordinate file (b4em.gro, 2312) does not > match topology (twopolypeptide.top, 2291)" > How can I fix this? Make them match. Assuming you haven't managed a gross mismatch of files, your [molecules] section of your .top probably isn't right. Chapter five of the manual is your friend here. Mark _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php ____________________________________________________________________________________ The fish are biting. Get more visitors on your site using Yahoo! Search Marketing. http://searchmarketing.yahoo.com/arp/sponsoredsearch_v2.php _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
