Hi Serdar,

Assuming you installed gromacs, you have to make sure the executables
are in the path, e.g. by using "source
[yourgromacsbinariesdirectory/]GMXRC"

It may help to learn a bit more about Linux...

Cheers,

Tsjerk

On 6/27/07, serdar durdagi <[EMAIL PROTECTED]> wrote:
Hi all,

I am trying to convert pdb file to gmx files using "pdb2gmx" command under
linux. However, the command is not recognizable..Is anybody knows the
solution?

Cheers,

Serdar



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Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
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