I'm doing MD Simulation on self-assembly of lipid molecules using
gromacs. If someone can kindly help me find the conditions (for my
.mdp file) for these kind of simulation? There are many choices and
i would like to ask for opinion on general (usually) conditions used
in the .mdp file for the simulation. I would like to look for
physical and some thermodynamical properties from my simulation
results. This is to aid the experimental results done.
Any paper or links also can help me a lot. I have read many papers
but i thought maybe u guys can help add more to it. This is because
not much options i can find in those papers and not all of them use
gromacs.Thanks for reading and your help is greatly appreciated.
Thanks again.
Did you search the mailing list?
A search for (lipid mdp) returns >200 posts and I found some relevant
info within less than a minute. I also made a recent post on this topic:
http://www.gromacs.org/pipermail/gmx-users/2007-August/029213.html
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