Jonathan Spicer wrote:
Hi
I'm currently setting up some machines to run gromacs (3.3.1) and have run into a problem with mdrun and mdadm. I have (hopefully) successfully compiled gromacs but when running the demo in /share/tutor/gmxdemo i get either :

mdamd: error reading /dev/md-nice : no such file or folder
this is part of the OS oftware on your computer for RAID disks.
try sourcing the GMXRC file in the gromacs bin dir.

or when modifying the demo to include --auto=md or =mdp in the mdrun commands i get

mdadm: /dev/md-nice not identified in config file.

i know that the mdadm is used in controlling raid devices, however i'm not sure of it's application here or any possible fix for this

any help in this in much appreciated
many thanks
Jonathan Spicer

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--
David van der Spoel, Ph.D.
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:  +46184714205. Fax: +4618511755.
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