Hi All, I am a brand new user of GROMACS, and want to run a simulation of a protein embedded in a large POPC lipid bilayer. I am familiar with MD in general (have used NAMD before).
It would be very helpful if you could please advise me where to start ? Specifically: - which force field versions to use ? I understand there are various versions within GROMACS ? - how to setup systems ? I am sure this must be a fairly common question, and a repository with the necessary directions probably exists for new users like me ? Thank you very much in advance for your help, Sincerely, -Maria -- Maria G. Technical University of Denmark Copenhagen
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