Shalom, The easy way is to remove lipids such that a hole in the membrane will form, put your protein in in run. Or you can try the protocol in Faraldo-Gomez, J. D., Smith, G. R., and Sansom, M. S. (2002) "Setting up and optimization of membrane protein simulations. European Biophysics Journal" 31(3), 217-227.
You will probably need mdrun_make_hole.tar.gz which is used as a modifier of gromacs 3.1.4. Best, Itamar -----Original Message----- From: [EMAIL PROTECTED] on behalf of mahbubeh zarrabi Sent: Thu 04/10/2007 06:52 To: [email protected] Subject: [gmx-users] protein in membrane Dear all i want to insert protein in popc.which practical protocol in gromacs is useful for me? thanks ____________________________________________________________________________________ Tonight's top picks. What will you watch tonight? Preview the hottest shows on Yahoo! TV. http://tv.yahoo.com/ _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
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