Hi, > Hi All, > > I had this problem running MD on a single Debian machine: > > Program mdrun_d, VERSION 3.3.1 > Source code file: stat.c, line: 257 > > Fatal error: > XTC error > > > There is no chance of being size exceeded of file or quota, or disk error. > I compiled gromacs with gcc-3.4... > > Does anyone know what this error means? Gcc version may be the cause? > > Thanks, > > Luciano P Gomes > >
> it can also mean that your system is exploding. > No. The xtc file doesn't opened. It crashed VMD. I forgot saying that I was running simulated annealing protocol with a DNA molecule and crystallographic water molecules (HOH) freezed, only moving ions and water molecules placed by genbox (tip3p). The crash occured on 2 ps of simulation time in a temperature of 50K. I had excluded non-bonded interactions: DNA DNA HOH DNA HOH HOH. I am running now a simple MD at 300K and this error haven't occured yet. I am trying to understand... Thanks, Luciano _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
