Thanks for the quick response. I am using the MacPorts/DarwinPorts installation so I don't think I have direct access to the compiler this way. I do have access to the Mac OS X binaries. Can I use these since they are already compiled? If so how do I go about this. The MacPorts are convenient and worked well on my other Macs before I switched over to OS 10.5.
Thanks for any assistance. Carl Carl E. Bonner, Jr., Ph.D Professor of Chemistry and Materials Science Norfolk State University 700 Park Avenue, Norfolk, VA 23504 (757) 823-2097 (voice) (757) 823-9054 (fax), http://vigyan.nsu.edu/~cmr/cebonner.htm -----Original Message----- From: [EMAIL PROTECTED] on behalf of [EMAIL PROTECTED] Sent: Sun 12/2/2007 6:00 AM To: [email protected] Subject: gmx-users Digest, Vol 44, Issue 3 Send gmx-users mailing list submissions to [email protected] To subscribe or unsubscribe via the World Wide Web, visit http://www.gromacs.org/mailman/listinfo/gmx-users or, via email, send a message with subject or body 'help' to [EMAIL PROTECTED] You can reach the person managing the list at [EMAIL PROTECTED] When replying, please edit your Subject line so it is more specific than "Re: Contents of gmx-users digest..." Today's Topics: 1. Re: Help, Errors while compiling gromacs under Mac OS X 10.5 Leopard (David van der Spoel) ---------------------------------------------------------------------- Message: 1 Date: Sun, 02 Dec 2007 09:56:17 +0100 From: David van der Spoel <[EMAIL PROTECTED]> Subject: Re: [gmx-users] Help, Errors while compiling gromacs under Mac OS X 10.5 Leopard To: Discussion list for GROMACS users <[email protected]> Message-ID: <[EMAIL PROTECTED]> Content-Type: text/plain; charset=ISO-8859-1; format=flowed Bonner, Carl E. wrote: > I am trying to set up gromacs on a G4 powerbook 1.25 GB RAM, 60 MB Drive, I > have upgraded to OS X 10.5. I am using the Darwinports installer. As > instructed, I have installed XCode tools, X11 SDK. I got xmgrace to work, > however, gwyddion, rasmol and gromacs error on compilation. For gromacs, I > get the following error: This may mean that you have to change some compiler flags, since Leopard comes with a new version of gcc. Previously one had to use -faltive. Maybe you can read the gcc manual (man gcc) and the rerun make CFLAGS="-faltivec" or similar new flags. But I cannot find the right options right now.. > > > Carl-Bonners-laptop-Computer:gromacs carlbonner$ sudo port install gromacs > Password: > ---> Building gromacs with target all > Error: Target org.macports.build returned: shell command " cd > "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports > .org_release_ports_science_gromacs/work/gromacs-3.3.1" && make all " returned > error 2 > Command output: nb_kernel010_ppc_altivec.c:145: error: 'Vvdw6' undeclared > (first use in this function) > nb_kernel010_ppc_altivec.c:146: error: 'Vvdw12' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c:150: error: 'fs' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c:159: error: 'tmp1' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c:159: error: 'tmp2' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c:159: error: 'tmp3' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c:159: error: 'tmp4' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c: In function 'nb_kernel010nf_ppc_altivec': > nb_kernel010_ppc_altivec.c:293: error: 'vector' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c:293: error: syntax error before 'float' > nb_kernel010_ppc_altivec.c:312: error: 'nul' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c:331: error: 'shvec' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c:334: error: 'ix' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c:335: error: 'Vvdwtot' undeclared (first use in > this function) > nb_kernel010_ppc_altivec.c:339: error: 'iy' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c:339: error: 'iz' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c:353: error: 'dx' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c:353: error: 'dy' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c:353: error: 'dz' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c:357: error: 'rsq' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c:360: error: 'rinvsq' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c:361: error: 'rinvsix' undeclared (first use in > this function) > nb_kernel010_ppc_altivec.c:367: error: 'c6' undeclared (first use in this > function) > nb_kernel010_ppc_altivec.c:367: error: 'c12' undeclared (first use in this > function) > make[5]: *** [nb_kernel010_ppc_altivec.lo] Error 1 > make[4]: *** [all-recursive] Error 1 > make[3]: *** [all-recursive] Error 1 > make[2]: *** [all-recursive] Error 1 > make[1]: *** [all] Error 2 > make: *** [all-recursive] Error 1 > > Is this a problem with my gromacs installation, Leopard, or the operator? > > Thanks for any help > > Carl E. Bonner, Jr., Ph.D > Professor of Chemistry and Materials Science > Norfolk State University 700 Park Avenue, Norfolk, VA 23504 > (757) 823-2097 (voice) (757) 823-9054 (fax), > http://vigyan.nsu.edu/~cmr/cebonner.htm > > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php -- David van der Spoel, Ph.D. Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University. Box 596, 75124 Uppsala, Sweden. Phone: +46184714205. Fax: +4618511755. [EMAIL PROTECTED] [EMAIL PROTECTED] http://folding.bmc.uu.se ------------------------------ _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! End of gmx-users Digest, Vol 44, Issue 3 ****************************************
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