wangcl wrote:
Dear all users,
I want to analyze Hydrogen-bond among water molecules using "g_hbond"
command. We use periodic boundary conditions in the simulation box.
The question is: I don't know whether this "g_hbond" tool considers the
"periodic boundary conditions", that is,
whether this tool considers Hydrogen-bonds formed between BOUNDARY
water molecules due to pbc.
it does
GROMACS 3.3.1 is used.
Thank you!
Chunlei Wang
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David van der Spoel, Ph.D.
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
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