pragya chohan wrote:
Dear Users
I am doing membrane simulation alternating nvt and npt during production
run. After 1250 ps the water from upper leaflet goes towards the lower
leaflet and a very thin layer of water remains in the upper leaflet. Is
it a common occurance or am I doing some mistake?
Probably you are observing an artefact of periodic boundary conditions -
see http://wiki.gromacs.org/index.php/Periodic_Boundary_Conditions for
advice here.
Mark
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