Hi,
I was looking into the code, how the velocities are generated in
grompp, once the option genvel is used in the .mdp file.
I don't understand why the number of degrees of freedom which are
used to calculate the scaling factor for the random velocities is 3N
and not 3N-Nc ( Nc= Number of constraitns; N=Number of atoms).
is there some special reason?
Tank you in advance for your help
Esteban
_______________________________________________
gmx-users mailing list [email protected]
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php