Hi All, Myself Kinshuk from IIT-Bombay.I have gone through gromacs mailing list there i came to know about you while searching the solution of the problem while running minimization using .tpr in position restraints steps of MD run.I have been performing simulation of guanidium ion & phosphate ion by gromacs. i hope i will be getting answer of my problem .
In my case no problem is coming while running the grompp, no warning is coming. i could able to generate .tpr file without any error. problem cames only while running the minimization using the .tpr file For convenience, as mention earlier, following was the problem : ................... #Warning: 1-4 interaction between 1 and 9 at distance 8.443 which is larger than the 1-4 table size 1.000 nm These are ignored for the rest of the simulation This usually means your system is exploding, if not, you should increase table-extension in your mdp file# I will be thankful if i'll be getting solution of this problem. _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
