Hi There,
I know this is not related to GMX, but was wondering if any one has any
experience with mpi enabled zdock on linux based cluster. Specifically, I am
trying to use zdock2.3_linux_mpi version on a cluster of Opteron 2212 CPUs. It
looks like the application works on all nods but can not write out the results
into the output file. This does not happen when I use non-mpi version
(zdock3.0_linux_p3) on a single processor. Here is the error that I get:
$ sort: open failed: +6: No such file or directory
[2]-
Also the content of the generated output file is like this (comparing to
content of the output file for zdock3.0_linux_p3 program, nothing has been
written to it):
105 1.2
0.000000 0.000000 0.000000
1CGI_r_m.pdb 23.552 26.554 22.589
1CGI_l_m_bl.pdb 43.446 33.312 33.288
I appreciate any suggestion.
Cheers, Siavoush
_______________________________________________
gmx-users mailing list [email protected]
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
