Dear users, I'm running NPT simulation POPC with a short peptide. I see the long bonds across the unit cell in VMD. Why am I getting broken lipid molecules in the trajectory (original .xtc file w/o any post-modification)?
Some lipids move whole molecules, but some are broken. How can I control the unit of image? I couldn't find any related word in the manual. I assume image will be done by "residue". Then I shouldn't get this strange result. I got the popc.itp from Dr. Tieleman's web site. Any idea? -- Best wishes, MYUNGGI YI ================================== KLB 419 Institute of Molecular Biophysics Florida State University Tallahassee, FL 32306 Office: (850) 645-1334 http://www.scs.fsu.edu/~myunggi
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