Thank you. I've already read the part, but I was wondering how can I supply my reference z positon in the .itp file.
I can prepare the "restraint.gro" file manually by placing the atoms at z= 1.0 nm. Then I think I can supply with -r option. Have a great day. On Jan 16, 2008 3:44 PM, Mark Abraham <[EMAIL PROTECTED]> wrote: > Myunggi Yi wrote: > > Thank you. > > > > I'm a beginner. > > How can I setup the restrain? > > Where should I get the information. > > The manual is not enough for me. > > There's even an example of planar restraints in chapter 5. > > > The position restraint .itp file dosen't seem to offer for the reference > > (z= 1.0) option. > > Whould give me more detail? > > You're not constraining to a plane, you're restraining the coordinates > to be near the plane it starts on (but for advanced usage read about > grompp -r). For now, see the links on the URL that Anirban provided. > > Mark > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Best wishes, MYUNGGI YI ================================== KLB 419 Institute of Molecular Biophysics Florida State University Tallahassee, FL 32306 Office: (850) 645-1334 http://www.scs.fsu.edu/~myunggi
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