Email them to me and I will post them on the internet and provide
links to this list.
chris.neale |at| utoronto.ca
Hi Myunggi Yi,
I said link them, not mail them to me. Check your .tpr file to see 1.
whether these parts of your lipids are already separated at the start of the
equilibration run (you can extract the coordinates with editconf) and 2.
whether you actually have bonds defined where you expect them to be.
Cheers,
Tsjerk
On Jan 16, 2008 3:47 PM, Myunggi Yi <[EMAIL PROTECTED]> wrote:
I have tried to attach my .gro file, but it is not allowed in mailing
list.
I'm attaching small file of the snap shot of the gro file.
The limit is 50 KB. What can I do?
I'm attaching the file to you (Tsjerk Wassenaar).
Again I didn't do any modification. This is a just output from MD.
As you know you can check the coordinate in the .gro text file.
This is not a visulalization problem.
If any body wants, I will send you my .gro file.
I downloaded popc.itp form Dr. Tieleman's web.
As you see the lipid can be broken any bond (see two fragment of lipid at
the bottom),
however the left sile lipid are Okay.
Any idea?
_______________________________________________
gmx-users mailing list gmx-users@gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
