I think I saw this before... check if openmotif contains this library and install it or just try.
./configure --without-x --enable-mpi Cheers, Diego Enry. On Jan 18, 2008 6:45 AM, Andreas Kukol <[EMAIL PROTECTED]> wrote: > On SuseLinux 10.3 the command ./configure --enable-mpi works fine but make > terminates at this point. Using the option --disable-shared did not change > anything. > > I would be grateful for any help. > > Many thanks > Andreas > > Output of make: > ---- > mv -f .deps/nb_free_energy.Tpo .deps/nb_free_energy.Plo > /bin/sh ../../../libtool --tag=CC --mode=link mpicc -O3 -fomit-frame-pointe > r -finline-functions -Wall -Wno-unused -funroll-all-loops -o > libnonbonded.la nonbonded.lo nb_free_energy.lo > nb_kernel_x86_64_sse/libnb_ kernel_x86_64_sse.la > nb_kernel/libnb_kernel.la -L/usr/lib64 -lnsl -lfftw3f -lm > -L/usr/lib64 -lXm -lXt -lSM -lICE -lX11 > mkdir .libs > libtool: link: cannot find the library `/usr/lib/libXmu.la' or unhandled argum > ent `/usr/lib/libXmu.la' > make[5]: *** [libnonbonded.la] Error 1 > make[5]: Leaving directory `/usr/local/gromacs-3.3.2/src/gmxlib/nonbonded' > make[4]: *** [all-recursive] Error 1 > make[4]: Leaving directory `/usr/local/gromacs-3.3.2/src/gmxlib/nonbonded' > make[3]: *** [all-recursive] Error 1 > make[3]: Leaving directory `/usr/local/gromacs-3.3.2/src/gmxlib' > make[2]: *** [all-recursive] Error 1 > make[2]: Leaving directory `/usr/local/gromacs-3.3.2/src' > make[1]: *** [all] Error 2 > make[1]: Leaving directory `/usr/local/gromacs-3.3.2/src' > make: *** [all-recursive] Error 1 > ------ > > This is the output of configure: > > ----- > hecking build system type... x86_64-unknown-linux-gnu > checking host system type... x86_64-unknown-linux-gnu > checking for a BSD-compatible install... /usr/bin/install -c > checking whether build environment is sane... yes > checking for a thread-safe mkdir -p... /bin/mkdir -p > checking for gawk... gawk > checking whether make sets $(MAKE)... yes > checking how to create a ustar tar archive... gnutar > checking for cc... cc > checking for C compiler default output file name... a.out > checking whether the C compiler works... yes > checking whether we are cross compiling... no > checking for suffix of executables... > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether cc accepts -g... yes > checking for cc option to accept ISO C89... none needed > checking for style of include used by make... GNU > checking dependency style of cc... gcc3 > checking dependency style of cc... gcc3 > checking for mpxlc... no > checking for mpicc... mpicc > checking whether the MPI cc command works... yes > checking how to run the C preprocessor... mpicc -E > checking whether mpicc accepts -O3... yes > checking whether mpicc accepts -malign-double... no > checking whether mpicc accepts -funroll-all-loops... yes > checking whether mpicc accepts -O3 -fomit-frame-pointer -finline-functions > -Wall -Wno-unused -funroll-all-loops... yes > checking for grep that handles long lines and -e... /usr/bin/grep > checking for egrep... /usr/bin/grep -E > checking for ANSI C header files... yes > checking for sys/types.h... yes > checking for sys/stat.h... yes > checking for stdlib.h... yes > checking for string.h... yes > checking for memory.h... yes > checking for strings.h... yes > checking for inttypes.h... yes > checking for stdint.h... yes > checking for unistd.h... yes > checking whether byte ordering is bigendian... no > checking for int... yes > checking size of int... 4 > checking for long int... yes > checking size of long int... 8 > checking for long long int... yes > checking size of long long int... 8 > checking floating-point format... IEEE754 (little-endian byte and word order) > checking for a BSD-compatible install... /usr/bin/install -c > checking whether ln -s works... yes > checking whether make sets $(MAKE)... (cached) yes > checking for a sed that does not truncate output... /usr/bin/sed > checking for ld used by mpicc... /usr/x86_64-suse-linux/bin/ld > checking if the linker (/usr/x86_64-suse-linux/bin/ld) is GNU ld... yes > checking for /usr/x86_64-suse-linux/bin/ld option to reload object files... -r > checking for BSD-compatible nm... /usr/bin/nm -B > checking how to recognise dependent libraries... pass_all > checking dlfcn.h usability... yes > checking dlfcn.h presence... yes > checking for dlfcn.h... yes > checking for g++... g++ > checking whether we are using the GNU C++ compiler... yes > checking whether g++ accepts -g... yes > checking dependency style of g++... gcc3 > checking how to run the C++ preprocessor... g++ -E > checking the maximum length of command line arguments... 32768 > checking command to parse /usr/bin/nm -B output from mpicc object... ok > checking for objdir... .libs > checking for ar... ar > checking for ranlib... ranlib > checking for strip... strip > checking if mpicc supports -fno-rtti -fno-exceptions... no > checking for mpicc option to produce PIC... -fPIC > checking if mpicc PIC flag -fPIC works... yes > checking if mpicc static flag -static works... yes > checking if mpicc supports -c -o file.o... yes > checking whether the mpicc linker (/usr/x86_64-suse-linux/bin/ld -m > elf_x86_64) > supports shared libraries... yes > checking dynamic linker characteristics... GNU/Linux ld.so > checking how to hardcode library paths into programs... immediate > checking whether stripping libraries is possible... yes > checking if libtool supports shared libraries... yes > checking whether to build shared libraries... no > checking whether to build static libraries... yes > configure: creating libtool > appending configuration tag "CXX" to libtool > checking for ld used by g++... /usr/x86_64-suse-linux/bin/ld -m elf_x86_64 > checking if the linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) is GNU > ld... yes > checking whether the g++ linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) > supports shared libraries... yes > checking for g++ option to produce PIC... -fPIC > checking if g++ PIC flag -fPIC works... yes > checking if g++ static flag -static works... yes > checking if g++ supports -c -o file.o... yes > checking whether the g++ linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) > supports shared libraries... yes > checking dynamic linker characteristics... GNU/Linux ld.so > checking how to hardcode library paths into programs... immediate > appending configuration tag "F77" to libtool > checking for special C compiler options needed for large files... no > checking for _FILE_OFFSET_BITS value needed for large files... no > checking for _LARGEFILE_SOURCE value needed for large files... no > checking for sqrt in -lm... yes > checking for fftw3.h... yes > checking for main in -lfftw3f... yes > checking rpc/rpc.h usability... yes > checking rpc/rpc.h presence... yes > checking for rpc/rpc.h... yes > checking for rpc/xdr.h... yes > checking for xdr_float in -lnsl... yes > checking for working memcmp... yes > checking return type of signal handlers... void > checking for vprintf... yes > checking for _doprnt... no > checking if malloc debugging is wanted... no > checking for strcasecmp... yes > checking for strdup... yes > checking for bool... no > checking for X... libraries /usr/lib64, headers > checking whether -R must be followed by a space... neither works > checking for gethostbyname... yes > checking for connect... yes > checking for remove... yes > checking for shmat... yes > checking for IceConnectionNumber in -lICE... yes > checking for Motif... libraries /usr/lib64, headers in default path > checking for libXext and libXp... no > checking for only libXext... no > checking limits.h usability... yes > checking limits.h presence... yes > checking for limits.h... yes > checking for strings.h... (cached) yes > checking for unistd.h... (cached) yes > checking for unistd.h... (cached) yes > checking for an ANSI C-conforming const... yes > checking for size_t... yes > checking whether struct tm is in sys/time.h or time.h... time.h > checking for uid_t in sys/types.h... yes > checking for inline... inline > checking whether your compiler can handle assembly files (*.s)... yes > checking whether as fully supports X86_64 SSE instructions... yes > checking whether byte ordering is bigendian... (cached) no > configure: creating ./config.status > config.status: creating Makefile > config.status: creating src/Makefile > config.status: creating src/gmxlib/Makefile > config.status: creating src/gmxlib/gmx_blas/Makefile > config.status: creating src/gmxlib/gmx_lapack/Makefile > config.status: creating src/gmxlib/nonbonded/Makefile > config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile > config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile > config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile > config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile > config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile > config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile > config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile > config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile > config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile > config.status: creating include/Makefile > config.status: creating include/types/Makefile > config.status: creating src/mdlib/Makefile > config.status: creating src/kernel/Makefile > config.status: creating src/tools/Makefile > config.status: creating src/ngmx/Makefile > config.status: creating src/contrib/Makefile > config.status: creating scripts/Makefile > config.status: creating admin/Makefile > config.status: creating share/Makefile > config.status: creating share/tutor/Makefile > config.status: creating share/tutor/gmxdemo/Makefile > config.status: creating share/tutor/nmr1/Makefile > config.status: creating share/tutor/nmr2/Makefile > config.status: creating share/tutor/water/Makefile > config.status: creating share/tutor/mixed/Makefile > config.status: creating share/tutor/methanol/Makefile > config.status: creating share/tutor/speptide/Makefile > config.status: creating share/template/Makefile > config.status: creating share/top/Makefile > config.status: creating share/html/Makefile > config.status: creating share/html/images/Makefile > config.status: creating share/html/online/Makefile > config.status: creating man/Makefile > config.status: creating man/man1/Makefile > config.status: creating src/config.h > config.status: executing depfiles commands > > * Seems you are compiling with MPI support. You can install the MPI- > enabled programs with suffixed names to have both MPI and non-MPI > versions. This is useful e.g. on supercomputers where you usually > cannot run MPI-linked programs on the login node. > Set a suffix with e.g. --program-suffix=_mpi (or _mpi_d for double). > You only need MPI for mdrun, so if you already have non-MPI stuff > installed you can issue make mdrun; make install-mdrun. > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Diego Enry B. Gomes Laboratório de Modelagem e Dinamica Molecular Universidade Federal do Rio de Janeiro - Brasil. _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
