Wouldn't it be a lot easier to just do: eneconv -f *.edr
Or am I misunderstanding what you're trying to accomplish? -Justin Quoting Sergio <[EMAIL PROTECTED]>: > Dear Diego I'm not sure whether I am understanding well what you suggest > me. The fact is that I have 1000 energy files to concatenate in one PC. > My bash script takes the fist two files and concatenates them to produce > a temporary output file (using eneconv), after that it concatenates the > last temporary file with the next one to produce a new temp file, and so > on. Thank you Diego Enry wrote: I think it would take more time to > transfer files than doing it on a single machine, but here is what I > suggest: Assuming you have a cluster of 5 nodes you may concatenate by > parts than put it all together, something like this: transfer .edr files > to /tmp/ of each node than eneconv the fragments node1 fragments 1-199 > node2 fragments 200-399 node3 fragments 400-599 node4 fragments 600-799 > node5 fragments 800-1000 transfer all back to your $HOME and eneconv all > five fragments. > > -- Diego Enry B. Gomes Laboratório de Modelagem e Dinamica Molecular > Universidade Federal do Rio de Janeiro - Brasil. > ------------------------------ > > -- > Alberto Sergio Garay > Practica Profesional - Departamente de Física > Facultad de Bioquímica Y Cs. Biológicas > Santa Fe - 3000 - Ciudad Universitaria > Santa Fe - Argentina > > ======================================== Justin A. Lemkul Graduate Research Assistant Department of Biochemistry Virginia Tech Blacksburg, VA [EMAIL PROTECTED] | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/ ======================================== _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
