Hi Gromacs Users
I've looked at trying to build Gromacs 3.3.2 with the pretty much the
same configuration and suggestions as below, but I am still running
into the ld error:
ld: in ../gmxlib/.libs/libgmx.a(nb_kernel300_ia32_3dnow.o), in section
__TEXT,__text reloc 1: bad pc-rel vanilla relocation length
Any other suggestions?
Warner Yuen
Scientific Computing
Consulting Engineer
Apple Computer
email: [EMAIL PROTECTED]
Tel: 408.718.2859
Fax: 408.715.0133
On Jan 24, 2008, at 3:00 AM, [EMAIL PROTECTED] wrote:
------------------------------
Message: 7
Date: Thu, 24 Jan 2008 11:14:56 +0100 (CET)
From: Yunan Yan <[EMAIL PROTECTED]>
Subject: [gmx-users] Re: installation problem for MAC OS
To: [email protected]
Message-ID:
<[EMAIL PROTECTED]>
Content-Type: TEXT/PLAIN; charset=US-ASCII
Thank you so much. It works.
Best,
Yun-an
Hello!
A quick fix so that you will be able to compile, is to try to run the
configure script with the flag --disable-ia32-sse.
Hopefully you should get a working installation, but with no sse-
support (which might be what you want :-)
Cheers
/Per
23 jan 2008 kl. 14.24 skrev Yunan Yan:
Dear all,
I have difficulties when I try to
install Gromacs 3.3.2 in my MAC OS.
Please see the following for details.
configuration:
$ ./configure CC=icc CXX=icc F77=ifort
--prefix=/Users/yunan/usr/local/Gromacs --with-qmmm-cpmd --with-
fft=fftw3
CLAGS=-no-multibyte-chars CPP=/usr/bin/cpp
System information:
uname -m = i386
uname -r = 9.1.0
uname -s = Darwin
uname -v = Darwin Kernel Version 9.1.0: Wed Oct 31 17:46:22 PDT
2007;
root:xnu-1228.0.2~1/RELEASE_I386
/usr/bin/hostinfo = Mach kernel version:
Darwin Kernel Version 9.1.0: Wed Oct 31 17:46:22 PDT 2007;
root:xnu-1228.0.2~1/RELEASE_I386
Kernel configured for up to 8 processors.
8 processors are physically available.
8 processors are logically available.
Processor type: i486 (Intel 80486)
configure:3291: icc -V
Intel(R) C Compiler for applications running on IA-32, Version 10.1
Build 20070913 Package ID: m_cc_p_10.1.006
Copyright (C) 1985-2007 Intel Corporation. All rights reserved.
Error:
icc -funroll-all-loops -I/Users/yunan/usr/local/lib -framework
Accelerate
-o grompp topio.o toppush.o topcat.o topshake.o convparm.o tomorse.o
sorting.o splitter.o vsite_parm.o readir.o add_par.o topexcl.o
toputil.o
topdirs.o grompp.o compute_io.o ../mdlib/.libs/libmd.a -L/usr/X11/
lib
../gmxlib/.libs/libgmx.a -lfftw3f /usr/X11/lib/libSM.6.0.0.dylib
/usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib
/usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib
ld: in ../gmxlib/.libs/libgmx.a(nb_kernel204_ia32_sse.o), in section
__TEXT,__text reloc 1: bad pc-rel vanilla relocation length
The same will happen when I use gcc compiler.
Does someone have some ideas about what's going on
here and how to figure it out?
Thanks a lot.
Best regards,
Yun-an
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