Dear Gromacs users,
I am beginner in using using GROMACS and MD simulations, Please help
me in solving my problem.
I simulate my protein for 5 ns and after simulations RMSD in C-alpha is
showing a big fluctuation after 3 ns and til 3.5 ns to 4.5 ns its fine and
again its showing fluctuation its till 2.5 nm. Please Tell me how should I
analyze this and How can I sort out this problem.
Thanking you
--
Anamika Awasthi, PhD
DBT-Postdoctoral Fellow
Laboratory of Structural Biology
Centre for DNA Fingerprinting and Diagnostics (CDFD)
ECIL Road, Nacharam
Hyderabad 500 076
INDIA
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