Justin A. Lemkul wrote:
I suspect you have an error with the order that you have included the relevant
.itp files within your topology. It would be helpful to include a snapshot of
your topology which illustrated the order in which these files are included.
Also, if you are asking whether your commands are right or not, you should
include your actual commands, otherwise our default assumption is "probably
not." :-)
Yep, and also the OP didn't say what force field they were using. Since
this defines the atom types, and their problem was with unknown atom
types, this information is important.
Mark
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