Quoting Ricardo Soares <[EMAIL PROTECTED]>: > Yes, I have permission to both view and modify content. I even run the > do_dssp command with the sudo (root user) option enabled. > > I think that the problem may then be related to sh: > "sh: /path/to/dssp: Permission denied"
Perhaps a naive question, but are you trying to execute some sort of shell script that specifies /path/to/dssp as the PATH to dssp? If so, you need to replace /path/to/dssp with the actual location (PATH) where the dssp executable is (i.e., /usr/bin/dssp). -Justin > > I'll try to change its permissions and post another message later with > the results. > > > > ----------------------------------------------------------------------------------------- > > > David van der Spoel wrote: > > In that case it should also work in gromacs... > I don't know what is going on. Do you have permission to write in the > working directory? > > -- > ___________________________________________________________ > > Ricardo Oliveira dos Santos Soares > Post-graduation Student in Biological Physics > University of Sao Paulo - USP > Faculty of Farmaceutical Sciences of Ribeirao Preto - FCFRP > Phone: 55 (16) 3602-4840 > Curriculum Lattes - http://lattes.cnpq.br/0777038258459931 > ___________________________________________________________ > > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > ======================================== Justin A. Lemkul Graduate Research Assistant Department of Biochemistry Virginia Tech Blacksburg, VA [EMAIL PROTECTED] | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/ ======================================== _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
