Hello,
I am looking to add position restraints to some atoms of a lipid
bilayer. There seem to be a lot in the list archives on this subject, but I
am still a tad confused. What I would like to do is to position restrain the
phosphorus atoms in only one leaflet of the bilayer. So how do I generate
such a pr file, and where should I include it? It seems as if things are
done per molecule, so if I put it in my *.top or *.itp files, the restraint
is on all P atoms in the system, not just the ones I want. Is there a way to
do this so that things are indexed per atom rather than per molecule?
Thanks,
Mike
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