Hi gmx-users, I used deprecated FF for protein in water simulation and ran minimisation, equilibration and production. After finishing protein inserted into POPC bilayer, which has ffgmx.itp. I thought POPC contain deprecated FF similarly I have used same FF for protein in water simlulation also . Whichone I have used deprecated FF for protein in water simulaiton is correct? or Suggest which FF normallly use? Thanks in advance.
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