Quoting Kateøina Hyn¹tová <[EMAIL PROTECTED]>: > The simulated system is a carbon chain of 1000 united atom units. Ive tried > bothmaking the system smaller (less units or extracting the trajectory for > one unit)and taking very short time of simulation using the flags -b and -e, > the system response is still the same (even after the run over weekend) The > simulation and all other tools used so far work ok even for much larger > systems.Ive also tried the -msd flag in g_analyze tool, I get the msd graph > "immediatelly". The system im running the simulation on is currently CPU > INTEL Core 2 Quad Q600 (2.4GHz, 8M, 1066MHz), 4x1G DDR2-800 MHz Aeneon BOX. I > have also tried to recompile the g_msd tool.Could I be some problem of e.g. > memory? I appologize if Im not giving the exact or sufficient informationto > about the problem, Im the very begginer. Thank you very much for your > help.Best regards,Katka
How was your Gromacs version compiled, and what version are you using? What version of gcc was used? -Justin > >Otherwise, how big is the system, how long is the trajectory and what > >system are you running on? > > > >Mark > > _________________________________________________________________ > Explore the seven wonders of the world > http://search.msn.com/results.aspx?q=7+wonders+world&mkt=en-US&form=QBRE ======================================== Justin A. Lemkul Graduate Research Assistant Department of Biochemistry Virginia Tech Blacksburg, VA [EMAIL PROTECTED] | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/ ======================================== _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
