Quoting [EMAIL PROTECTED]: > Hello, > > I'm trying to run a simulation with one lipid molecule in a fixed > simulation box without pbc. > I set position restraints on one of the atoms and I seem to keep on > getting the following error: > > "...This usually means your system is exploding..." > > Do you have any idea what may cause this problem?
Not without further details. Where did you get the parameters for your lipid? What lipid is it? What did you do to minimize and equilibrate your system? What's in your .mdp file? See here: http://wiki.gromacs.org/index.php/blowing_up -Justin > > Thank you > Gadi > > > > ---------------------------------------------------------------- > This message was sent using IMP, the Internet Messaging Program. > > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > ======================================== Justin A. Lemkul Graduate Research Assistant Department of Biochemistry Virginia Tech Blacksburg, VA [EMAIL PROTECTED] | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/ ======================================== _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
