Hi All
I have been trying to simulate a DNA tetramer
d(GGGGTTTTGGGG)_2 using gromacs with amber ports. I
have downloaded the X-ray structure from
www.rcsb.org/pdb which has several missing hydrogen
atoms. Can anybody advise how to plug in the missing
atoms, e.g. with softwares or otherwise to proceed
with the pdb2gmx command?
Thanks
Ari
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