The output is telling you that gmxcheck is finding an interval that does not match what it is expecting. Did you assemble this trajectory from other pieces, and if so, how? You might also find this thread informative, there are several suggestions there as to how such things occur:
http://www.gromacs.org/pipermail/gmx-users/2008-May/033814.html -Justin Quoting Alberto Sergio Garay <[EMAIL PROTECTED]>: > Hi > > I was checking a xtc file with gmxcheck (without any option) and I > obtained some > information which I could not understand: > > Reading frame 80 time 2100.160 > Timestep at t=2100.16 don't match (0.00219727, 0.00170898) > reading frame 200 time 2100.400 > Timestep at t=2100.4 don't match (0.00219727, 0.00170898) > reading frame 300 time 2100.600 > Timestep at t=2100.64 don't match (0.00219727, 0.00170898) > .......................................................... > > What does these pairs of number mean at the end of each row (between > parenthesis)? > > Can I fix this problem? > > Any suggestion would be appreciated. > > -- > Dr. Sergio Garay > Facultad de Bioquimica y Cs. Biológicas > Universidad Nacional del Litoral > Santa Fe - Argentina > C.C. 242 - Ciudad Universitaria - C.P. S3000ZAA > Argentina > Ph. +54 (342) 4575-213 > Fax. +54 (342) 4575-221 > > > > > > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > ======================================== Justin A. Lemkul Graduate Research Assistant Department of Biochemistry Virginia Tech Blacksburg, VA [EMAIL PROTECTED] | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/ ======================================== _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
