Exactly what I was looking for!

Thanks a lot!

/Andreas



Justin Lemkul skrev:
Is this what you are looking for?

http://wiki.gromacs.org/index.php/Making_Commands_Non-Interactive

-Justin

Andreas Kring wrote:
Hello all,

Is it somehow possible to pass arguments to g_rdf from the command line or a file, such that g_rdf will not prompt me for which groups I want to calculate the rdf for?

For example, I have an .ndx file for water containing the groups

[SYSTEM]
[SOL]
[OW]
[HW1_HW2]

and I would like to calculate the oxygen-hydrogen RDF without being prompted by g_rdf?

(the reason is that I have a small Python script running the calculations for me, which could make use of this).

Best regards
Andreas
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Andreas Kring, Ph.D.-student
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