shahrbanoo karbalaee wrote:
Dear all and Mark
hi,
I want to get structures peptide during MD.(format pdb).how can I get it?
trjconv
and the scond question,
Dear Mark,IF I want to have average structure what do i do?let me explain it.
the peptide during MD has many structure.which structue is insert in
middle structures? and then average structure....what is your idea?
g_rmsf
g_cluster
please explore the wiki and the online resources.
--
David van der Spoel, Ph.D., Professor of Biology
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone: +46184714205. Fax: +4618511755.
[EMAIL PROTECTED] [EMAIL PROTECTED] http://folding.bmc.uu.se
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