Dear all,
Sometimes,the PDB file contains water molecules which only have the oxygen
atom. Can
Gromacs add the hydrogen atoms of the water molecules?
Additionly, when use Gromacs with the force field ffamber99, Can it add the
hydrogen
atoms of the DNA? Can I use the force field ffamber99 to simulate the system
which contains
proteins and DNAs?
Best regards,
=========================================
Dechang Li, PhD Candidate
Department of Engineering Mechanics
Tsinghua University
Beijing 100084
PR China
Tel: +86-10-62773779(O)
Email: [EMAIL PROTECTED]
=========================================
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