Dear Minnale,
just a comment.
Are you sure, that the APL value of POPC is about 0.63nm^2? Because, as
far as I know, at 303K the APL is about 0.683nm^2. (Structure of fully
hydrated fluid phase lipid bilayers with monounsaturated chains - Nagle
et al.). Which temperature did you used?
Balazs
minnale írta:
Hi all,
this may be a trivial query to you. I want to calculate the area of
lipid molecule. I have searched in gmx-archives and found how
calculate the area of lipid molecule with respective Time(ps). I would
like to ask two questions
1. Why we are concerning about (Box-x * Box-y)/(lipids of monolayer),
why cant Box-z?
2. Box-x and Box-y means length of simulation box, if we increase the
length of box sizes in x,y and zaxes for the system with 200
lipids(both sides) in that case is it possible to get simulation value
near to experimental value 0.63nm^2/sec for POPC.
Thanks in advance.
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