Thanks for Reply, I am using 310k T for POPC Bilayer.I have found area per lipid 0.63nm^2/sec at 310k in gmx-archives. I have got the value 0.64522nm^2/sec and asked to gmx-archvies people replied, that is reasonable value. the reference value is right? Thanks in advance
On Sat, 14 Jun 2008 Jojart Balazs wrote : >Dear Minnale, >just a comment. >Are you sure, that the APL value of POPC is about 0.63nm^2? Because, as far as >I know, at 303K the APL is about 0.683nm^2. (Structure of fully hydrated >ï¬uid phase lipid bilayers with monounsaturated chains - Nagle et al.). Which >temperature did you used? >Balazs > > >minnale Ãrta: >> >> >>Hi all, >>this may be a trivial query to you. I want to calculate the area of lipid >>molecule. I have searched in gmx-archives and found how calculate the area of >>lipid molecule with respective Time(ps). I would like to ask two questions >>1. Why we are concerning about (Box-x * Box-y)/(lipids of monolayer), why >>cant Box-z? >> >>2. Box-x and Box-y means length of simulation box, if we increase the length >>of box sizes in x,y and zaxes for the system with 200 lipids(both sides) in >>that case is it possible to get simulation value near to experimental value >>0.63nm^2/sec for POPC. >> >>Thanks in advance. >> >> >> >>------------------------------------------------------------------------ >> >>_______________________________________________ >>gmx-users mailing list [email protected] >>http://www.gromacs.org/mailman/listinfo/gmx-users >>Please search the archive at http://www.gromacs.org/search before posting! >>Please don't post (un)subscribe requests to the list. Use the www interface >>or send it to [EMAIL PROTECTED] >>Can't post? Read http://www.gromacs.org/mailing_lists/users.php >>------------------------------------------------------------------------ >> >> >>No virus found in this incoming message. >>Checked by AVG. Version: 8.0.100 / Virus Database: 270.3.0/1502 - Release >>Date: 13/06/2008 19:25 >> >
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