Hello,
I am a new user of Gromacs, and I am trying to simulate a system of a membrane
composed by POPC, cholesterol and sphingomyelin and a protein. I am using
lipid.itp, but it includes ffgmx.itp, and I have read it is deprecated, so I am
having a lot of problems to introduce the protein topology with ffG43a1 or
opls, without using ffgmx.itp also for the protein.
I would like to know which is the recommendation, because I am a bit confused
about this, an in the case of using a different force field from the deprecated
ffgmx for the protein, does anybody know where I could get the paremeters for
the Berger lipids constructed with a more modern forcefield than ffgmx?
I hope somebody could help me, I will really appreciate your advices.
Best wishes,
Rebeca Garcia
Parc Cientific de Barcelona
Universidad de Barcelona
[EMAIL PROTECTED]
Sigue de cerca las últimas tendencias y lo que más rompe MSN Vídeo
Todo ruedas: información práctica y todo el glamour del mundo del motor. MSN
Estilo y Tendencias
_________________________________________________________________
La vida de los famosos al desnudo en MSN Entretenimiento
http://entretenimiento.es.msn.com/
_______________________________________________
gmx-users mailing list [email protected]
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [EMAIL PROTECTED]
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
